Crystal structure of human phosphodiesterase 4d (PDE4d) with papaverine.
Cheng, R.K.Y., Crawley, L., Barker, J., Wood, M., Felicetti, B., Whittaker, M.To be published.
Experimental Data Snapshot
Starting Model: experimental
View more details
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
cAMP-specific 3',5'-cyclic phosphodiesterase 4D | 349 | Homo sapiens | Mutation(s): 0  Gene Names: PDE4D, DPDE3 EC: 3.1.4.17 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q08499 (Homo sapiens) Explore Q08499  Go to UniProtKB:  Q08499 | |||||
PHAROS:  Q08499 GTEx:  ENSG00000113448  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q08499 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
EV1 Query on EV1 | D [auth A] | 1-(3,4-DIMETHOXYBENZYL)-6,7-DIMETHOXYISOQUINOLINE C20 H21 N O4 XQYZDYMELSJDRZ-UHFFFAOYSA-N | |||
ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
MG Query on MG | C [auth A] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 83.502 | α = 90 |
b = 83.502 | β = 90 |
c = 148.144 | γ = 90 |
Software Name | Purpose |
---|---|
DNA | data collection |
PHASER | phasing |
REFMAC | refinement |
CrystalClear | data reduction |
CrystalClear | data scaling |